Resources and Courses

Scripts & Protocols

Running Snakemake on MetaCentrum

General scripts to run a snakemake pipelines on Metacentrum, a computing environment accessible to all Czechia-based scientists

Jörn GitHub

FASTQ to VCF

Scripts for varint calling and filtering of diploid-autopolyploid SNP dataset using GATK wrapped in a Snakemake pipeline

Jörn GitHub

ScanTools_ProtEvol

Population genomic inference from diploid-autopolyploid systems

Majda's GitHub
protocol
Sonia's github

Diversity and load analysis

Analysis of genetic load in diploids and autotetraploids

Jakub's GitHub

Pollen viability

Protocol for automatized detecting of pollen viability developed by Majda Bohutínská

protocol

Teaching materials

Materials for hands-on course on analysis of molecular data in EcoEvo (taught yearly at Charles Uni)

link

Workshops on population genetics of polyploids (Run every second year by an international team of lecturers)

link

Webpage of Interdisciplinary excursion, Mezioborová exkurze (in Czech)

link